PathMe-Viewer
stable
Contents:
Command Line Interface
Database Models
Database Manager
PathMe-Viewer
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Index
Symbols
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A
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B
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C
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D
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G
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M
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N
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P
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Q
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R
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V
Symbols
--host <host>
pathme_viewer-web command line option
--port <port>
pathme_viewer-web command line option
--static <static>
pathme_viewer-web command line option
--template <template>
pathme_viewer-web command line option
-a, --all
pathme_viewer-manage-export-to-tsv command line option
-c, --connection <connection>
pathme_viewer-manage command line option
pathme_viewer-manage-drop command line option
pathme_viewer-manage-export-to-tsv command line option
pathme_viewer-manage-load command line option
pathme_viewer-manage-summarize command line option
-f, --flatten <flatten>
pathme_viewer-manage-load command line option
-kp, --kegg_path <kegg_path>
pathme_viewer-manage-load command line option
-rp, --reactome_path <reactome_path>
pathme_viewer-manage-load command line option
-v, --debug
pathme_viewer-manage-drop command line option
-v, --verbose
pathme_viewer-web command line option
-wp, --wikipathways_path <wikipathways_path>
pathme_viewer-manage-load command line option
-y, --yes
pathme_viewer-manage-drop command line option
pathme_viewer-manage-load command line option
A
as_bel() (pathme_viewer.models.Pathway method)
authors (pathme_viewer.models.Pathway attribute)
B
blob (pathme_viewer.models.Pathway attribute)
C
contact (pathme_viewer.models.Pathway attribute)
count_pathways() (pathme_viewer.manager.Manager method)
count_pathways_by_resource() (pathme_viewer.manager.Manager method)
create_all() (pathme_viewer.manager.Manager method)
create_pathway() (pathme_viewer.manager.Manager method)
D
delete_all_pathways() (pathme_viewer.manager.Manager method)
delete_pathway() (pathme_viewer.manager.Manager method)
delete_pathways_from_resource() (pathme_viewer.manager.Manager method)
description (pathme_viewer.models.Pathway attribute)
display_name (pathme_viewer.models.Pathway attribute)
drop_all() (pathme_viewer.manager.Manager method)
G
get_all_pathway_graphs() (pathme_viewer.manager.Manager method)
get_all_pathways() (pathme_viewer.manager.Manager method)
get_or_create_pathway() (pathme_viewer.manager.Manager method)
get_pathway_by_id() (pathme_viewer.manager.Manager method)
get_pathway_by_name() (pathme_viewer.manager.Manager method)
get_pathways_from_resource() (pathme_viewer.manager.Manager method)
M
Manager (class in pathme_viewer.manager)
N
name (pathme_viewer.models.Pathway attribute)
number_of_edges (pathme_viewer.models.Pathway attribute)
number_of_nodes (pathme_viewer.models.Pathway attribute)
P
pathme_viewer (module)
pathme_viewer-manage command line option
-c, --connection <connection>
pathme_viewer-manage-drop command line option
-c, --connection <connection>
-v, --debug
-y, --yes
pathme_viewer-manage-export-to-tsv command line option
-a, --all
-c, --connection <connection>
pathme_viewer-manage-load command line option
-c, --connection <connection>
-f, --flatten <flatten>
-kp, --kegg_path <kegg_path>
-rp, --reactome_path <reactome_path>
-wp, --wikipathways_path <wikipathways_path>
-y, --yes
pathme_viewer-manage-summarize command line option
-c, --connection <connection>
pathme_viewer-web command line option
--host <host>
--port <port>
--static <static>
--template <template>
-v, --verbose
pathme_viewer.manager (module)
pathme_viewer.models (module)
Pathway (class in pathme_viewer.models)
pathway_id (pathme_viewer.models.Pathway attribute)
pathway_tuple (pathme_viewer.models.Pathway attribute)
pybel_version (pathme_viewer.models.Pathway attribute)
Q
query_pathway_by_name() (pathme_viewer.manager.Manager method)
query_pathway_by_name_and_resource() (pathme_viewer.manager.Manager method)
R
resource_name (pathme_viewer.models.Pathway attribute)
V
version (pathme_viewer.models.Pathway attribute)
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